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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_865617_866906_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
865617 - 866906
Intron Length:
1290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAAAT
5'SS Class:
major
3'SS Sequence:
TGTGTAATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTACTTTTATTT
Flanking Amino Acid:
TEKYASQQKRASKALEEKTN
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
76.8
33.7
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
69.9
0.45
1
62.4
42.3
Minor 5ss
29.3
-2.4
2.9
32.2
42.1
Minor BPS
57.1
0.3
1.5
73.47
37.9

Associated Gene:

Gene:
UBE2T
Ensembl Gene ID:
ENSAPLG00000016278
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016982
865429 - 870538
5110