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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_867526_867978_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
867526 - 867978
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CTTTCTTTAACT
Flanking Amino Acid:
CLDVLKLPPKGAWRPSLNIS
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.6
36.7
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
75
0.56
1
75.6
26.9
Minor 5ss
36.1
-1.6
3.3
45.9
49.3
Minor BPS
87.7
1.26
0.9
95.57
31.2

Associated Gene:

Gene:
UBE2T
Ensembl Gene ID:
ENSAPLG00000016278
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016982
865429 - 870538
5110