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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_869150_869501_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
869150 - 869501
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAGGTACC
5'SS Class:
major
3'SS Sequence:
CATTTTCCTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTTCCTAAAG
Flanking Amino Acid:
SGSRLDDLRAQILGAADTPY
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
69.7
41.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71.6
0.49
1
71.6
33
Minor 5ss
37
-1.5
3
45.5
35.6
Minor BPS
57.8
0.11
1.8
67.74
39.4

Associated Gene:

Gene:
UBE2T
Ensembl Gene ID:
ENSAPLG00000016278
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016982
865429 - 870538
5110