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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_869657_870056_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
869657 - 870056
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCCCGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAACGAT
U12 Branch Point Sequence:
GATTCCGTGATT
Flanking Amino Acid:
PPRAARCFPPSSSFGSDKIR
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.1
37.5
Major BPS
54.2
0.11
1.3
52.8
42.7
Major PPT
70
0.45
1
71.5
27
Minor 5ss
23.1
-3.1
3.2
27.7
44.2
Minor BPS
58.2
0.34
2
76.65
40.1

Associated Gene:

Gene:
UBE2T
Ensembl Gene ID:
ENSAPLG00000016278
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016982
865429 - 870538
5110