Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_87175_87398_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

87175 - 87398

Intron Length:

224

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGGAGC

5'SS Class:

strong_major

3'SS Sequence:

CTGCTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACCTCAA

U12 Branch Point Sequence:

ATTAGCCCAATC

Flanking Amino Acid:

AISLADSTDLRVLLNIMYLI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

69.5

41.1

Major BPS

64.3

0.36

65.6

31.9

Major PPT

81.9

0.72

0.8

76.4

32.2

Minor 5ss

38.7

-1.3

3.1

51.6

45.2

Minor BPS

43.6

-0.5

2.2

58.77

40.1

Associated Gene:

Gene:

STRIP1

Ensembl Gene ID:

ENSAPLG00000002822

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002889

86435 - 93970

7536