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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_872646_873494_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
872646 - 873494
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
ATATCCTCAAAG
Flanking Amino Acid:
MKQFKGLRAARMPHR
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
77
0.61
0.8
72.7
30.7
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
59.9
0.17
1.7
64.99
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016298
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022992
872630 - 888951
16322
ENSAPLT00000017015
872630 - 888951
16322