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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_873925_878616_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
873925 - 878616
Intron Length:
4692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTGAT
5'SS Class:
major
3'SS Sequence:
TCTCTTGCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
CCTCTCTGAAAG
Flanking Amino Acid:
VVGHSLYDTKRRCRPPDLDL
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
74.4
35.9
Major BPS
69.8
0.49
1
61
37.5
Major PPT
70.5
0.46
0.9
70.6
34.8
Minor 5ss
40.9
-1
3.2
57.9
46.7
Minor BPS
48
-0.2
1.7
50.47
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016298
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022992
872630 - 888951
16322