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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_876995_878616_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
876995 - 878616
Intron Length:
1622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TCTCTTGCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
CCTCTCTGAAAG
Flanking Amino Acid:
PVRNLTAEDFQRCRPPDLDL
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
69.8
0.49
1
61
37.5
Major PPT
70.5
0.46
0.9
70.6
34.8
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
48
-0.2
1.7
50.47
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016298
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017015
872630 - 888951
16322