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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_88084_88560_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88084 - 88560
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
CTCTGTTCAGGT
Flanking Amino Acid:
VLLLLWKTVLCTLGGFEELQ
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71
34.4
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
79.9
0.67
0.8
73.2
31.7
Minor 5ss
28.7
-2.4
3.5
34
43.2
Minor BPS
39.4
-0.7
2.2
54.98
47.4

Associated Gene:

Gene:
STRIP1
Ensembl Gene ID:
ENSAPLG00000002822
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002889
86435 - 93970
7536