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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_89777_89990_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
89777 - 89990
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAA
U12 Branch Point Sequence:
CTGTCTGCAACC
Flanking Amino Acid:
RSKFIGYTLGSDTNTVVGLP
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.9
34.5
Major BPS
53.2
0.08
1.4
65.6
41.4
Major PPT
80.8
0.69
0.7
72.4
32.3
Minor 5ss
34.6
-1.7
3.1
44.1
43.8
Minor BPS
47.7
-0.1
2.2
61.79
44.2

Associated Gene:

Gene:
STRIP1
Ensembl Gene ID:
ENSAPLG00000002822
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002889
86435 - 93970
7536