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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_899946_904285_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
899946 - 904285
Intron Length:
4340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTGTTTTGTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTGTCT
Flanking Amino Acid:
REERPGSAAQFIAGCMYRVV
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
69.6
34.4
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
73.3
0.52
1.1
79.2
38.4
Minor 5ss
34.1
-1.8
2.7
44.2
37.1
Minor BPS
52.8
0.17
3.5
90.53
33.5

Associated Gene:

Gene:
LRIF1
Ensembl Gene ID:
ENSAPLG00000001746
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001741
899881 - 909308
9428