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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_90935_91146_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90935 - 91146
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCACT
5'SS Class:
major
3'SS Sequence:
CTTTTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CCTTTTCCATCT
Flanking Amino Acid:
GLLPSLPQYMIALLKILLAA
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
0.9
73.2
37.4
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
84.2
0.77
0.7
77.1
31.6
Minor 5ss
36.7
-1.5
2.9
47
42.5
Minor BPS
42.6
-0.4
2
59.65
44.3

Associated Gene:

Gene:
STRIP1
Ensembl Gene ID:
ENSAPLG00000002822
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002889
86435 - 93970
7536