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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_91638_91731_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
91638 - 91731
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAC
U12 Branch Point Sequence:
TCTGCATTCACC
Flanking Amino Acid:
KHFKLNHIYQFEYMAQHLVF
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
69.9
0.5
1
73
31.5
Major PPT
81.2
0.7
0.7
76.4
25.6
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
50.4
-0
2.2
67.13
44.6

Associated Gene:

Gene:
STRIP1
Ensembl Gene ID:
ENSAPLG00000002822
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002889
86435 - 93970
7536