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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_916927_935421_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
916927 - 935421
Intron Length:
18495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGGTA
5'SS Class:
major
3'SS Sequence:
CTTTATGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTCACCTTCAGT
Flanking Amino Acid:
MQKEGLMILRNSCY
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.2
37.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
82.3
0.73
0.9
76.5
37.2
Minor 5ss
26
-2.8
3.7
36.6
47.9
Minor BPS
54.7
0.23
2.1
76.23
46.3

Associated Gene:

Gene:
CEPT1
Ensembl Gene ID:
ENSAPLG00000002219
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002393
916915 - 963768
46854