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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_921480_924181_R

Intron Information:

Intron Rank:
5
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
921480 - 924181
Intron Length:
2702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CATATTTCTTTAG|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TCTTCCTTAACA
Flanking Amino Acid:
LLWCSSSIASMFVSSLVLYS
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.2
0.03
1.2
56.4
43.4
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
76.3
0.59
0.8
74
36.3
Minor 5ss
97.5
1.6
0.6
95.7
13.5
Minor BPS
91.1
1.29
0.8
91.36
30.2

Associated Gene:

Gene:
DRAM2
Ensembl Gene ID:
ENSAPLG00000001918
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001987
919863 - 930991
11129