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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_924360_926800_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
924360 - 926800
Intron Length:
2441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGCT
5'SS Class:
major
3'SS Sequence:
TTTCTTTCCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
GGTTCTATACAA
Flanking Amino Acid:
FGLCIIANFQKSVLYYVHVV
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.61
1.1
72.6
36.5
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
83
0.74
0.7
77.4
31.3
Minor 5ss
37.8
-1.4
3
51.1
45.4
Minor BPS
46.4
-0.2
1.9
59.23
40

Associated Gene:

Gene:
DRAM2
Ensembl Gene ID:
ENSAPLG00000001918
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001987
919863 - 930991
11129