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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_926941_927502_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
926941 - 927502
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AAATCTTAAACA
Flanking Amino Acid:
GIMLNISAFLGVATMYVRYK
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.2
30.8
Major BPS
100
1.24
0.5
100
0
Major PPT
90.2
0.9
0.7
85.3
28
Minor 5ss
33.4
-1.9
2.8
34
41.5
Minor BPS
61.4
0.35
1.6
67.8
38.4

Associated Gene:

Gene:
DRAM2
Ensembl Gene ID:
ENSAPLG00000001918
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001987
919863 - 930991
11129