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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_927571_928270_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
927571 - 928270
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTCCATTTATCT
Flanking Amino Acid:
HHVDPLVPYISDTGTIPPER
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
1
88.2
26.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.5
0.8
0.8
77.6
36.5
Minor 5ss
33.8
-1.9
2.6
42.8
44.1
Minor BPS
48.7
-0
1.8
65.82
44.9

Associated Gene:

Gene:
DRAM2
Ensembl Gene ID:
ENSAPLG00000001918
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001987
919863 - 930991
11129