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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_928430_930898_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
928430 - 930898
Intron Length:
2469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CAATTCCTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTCAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
68.4
36.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72
0.5
0.9
65.1
35.8
Minor 5ss
33.7
-1.9
3.1
43.4
44.3
Minor BPS
65.3
0.56
1.7
85.16
35.3

Associated Gene:

Gene:
DRAM2
Ensembl Gene ID:
ENSAPLG00000001918
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001987
919863 - 930991
11129