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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_92992_93299_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92992 - 93299
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTCTG
5'SS Class:
major
3'SS Sequence:
TCCCTCTGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TCTCCTCTGACA
Flanking Amino Acid:
RLNDDWAYGNDLDARPWDFQ
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.7
45.5
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
71.3
0.48
0.9
64.2
36.6
Minor 5ss
44.4
-0.6
2.8
59.2
45.2
Minor BPS
56.1
0.18
1.7
68.58
37.7

Associated Gene:

Gene:
STRIP1
Ensembl Gene ID:
ENSAPLG00000002822
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002889
86435 - 93970
7536