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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_935824_939411_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
935824 - 939411
Intron Length:
3588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TTTACCCTCACT
Flanking Amino Acid:
VYYCPTATEQAPPWAYIACA
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
82.1
0.72
0.7
81.5
29.7
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
59.8
0.39
2.1
85.76
40.1

Associated Gene:

Gene:
CEPT1
Ensembl Gene ID:
ENSAPLG00000002219
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034201
935380 - 963768
28389
ENSAPLT00000002393
916915 - 963768
46854
ENSAPLT00000039953
935422 - 963768
28347