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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_939560_940541_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
939560 - 940541
Intron Length:
982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTCA
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ATGTTTTTACCA
Flanking Amino Acid:
FDHGCDSLSTVFVVLGTCIA
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
63.8
36.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
92.8
0.96
0.6
88.9
20.3
Minor 5ss
43.2
-0.7
3
57
47.2
Minor BPS
60.3
0.32
1.6
68.54
38.5

Associated Gene:

Gene:
CEPT1
Ensembl Gene ID:
ENSAPLG00000002219
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039953
935422 - 963768
28347
ENSAPLT00000034201
935380 - 963768
28389
ENSAPLT00000002393
916915 - 963768
46854