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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_940684_948211_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
940684 - 948211
Intron Length:
7528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTGCATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATGTTTTGAAAT
Flanking Amino Acid:
TYVSGTLRFGIFDVTESMLC
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
67
0.38
0.9
61.6
33.9
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
56.5
0.28
1.5
71.99
38.9

Associated Gene:

Gene:
CEPT1
Ensembl Gene ID:
ENSAPLG00000002219
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039953
935422 - 963768
28347