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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_948297_960078_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
948297 - 960078
Intron Length:
11782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAAGCGA
5'SS Class:
major
3'SS Sequence:
TCTTCCATTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CATCTTTTAACT
Flanking Amino Acid:
TLGPWFWNYTIPILNIQVKI
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
54.2
44.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
71.8
0.49
1
71.7
31.7
Minor 5ss
30
-2.3
3.3
38.6
46.5
Minor BPS
69.3
0.68
1.2
77.92
38.5

Associated Gene:

Gene:
CEPT1
Ensembl Gene ID:
ENSAPLG00000002219
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039953
935422 - 963768
28347