About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_961233_962527_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
961233 - 962527
Intron Length:
1295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAAATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
VSAKITNKLVVAHMTKSEMY
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
80.6
31.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.5
0.69
0.9
75.7
37.3
Minor 5ss
37.1
-1.5
2.7
44.2
37.1
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
CEPT1
Ensembl Gene ID:
ENSAPLG00000002219
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034201
935380 - 963768
28389
ENSAPLT00000002393
916915 - 963768
46854
ENSAPLT00000039953
935422 - 963768
28347