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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_979235_981278_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
979235 - 981278
Intron Length:
2044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CAGTTTATAAAA
Flanking Amino Acid:
PVSGTQGLQQTQQQIAVQGQ
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.1
24.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
85.6
0.8
0.7
84.6
30.4
Minor 5ss
31.8
-2.1
3
37.8
47
Minor BPS
47.2
-0.2
1.7
53.9
38.6

Associated Gene:

Gene:
NFYA
Ensembl Gene ID:
ENSAPLG00000002694
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042037
976079 - 985598
9520