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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_990322_990686_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
990322 - 990686
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TATTTATACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATTTATAC
Flanking Amino Acid:
QRDDRYIYYLITKKKVSHKP
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
67.9
37.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.2
0.5
0.9
71.3
38.5
Minor 5ss
29.9
-2.3
3.3
35.5
43.1
Minor BPS
50.1
-0
1.8
65.59
39.6

Associated Gene:

Gene:
OARD1
Ensembl Gene ID:
ENSAPLG00000002869
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002908
988977 - 991255
2279