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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_990800_991152_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
990800 - 991152
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
GGTGTCTTATTT
Flanking Amino Acid:
NNGVTDISMPKIGCGLDRLD
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
78.3
36.2
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
88.2
0.86
0.7
80.5
36.7
Minor 5ss
38.8
-1.3
3.1
50
40.3
Minor BPS
53.4
0.19
1.7
68.7
42.6

Associated Gene:

Gene:
OARD1
Ensembl Gene ID:
ENSAPLG00000002869
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002908
988977 - 991255
2279