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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1002568_1003278_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1002568 - 1003278
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
YQREGIPWKHIDYFNNQVIV
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79.5
28.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
93.8
0.98
0.5
92.8
16.7
Minor 5ss
31.3
-2.1
3.3
44.6
43.6
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
MYO1D
Ensembl Gene ID:
ENSAPLG00000005131
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041476
946819 - 1012777
65959
ENSAPLT00000023026
890864 - 1048509
157646
ENSAPLT00000005349
892226 - 1014247
122022