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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1003632_1004764_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1003632 - 1004764
Intron Length:
1133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGATGAA
U12 Branch Point Sequence:
TGAAGGCAAAAT
Flanking Amino Acid:
ATYGRDAFAKAIYERLFCWI
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
83
23.9
Major BPS
51.5
0.04
1.2
43.5
39.2
Major PPT
77.2
0.61
1
73.7
36.9
Minor 5ss
40
-1.1
2.9
49.4
41.3
Minor BPS
31.1
-1.3
2.5
48.39
43.6

Associated Gene:

Gene:
MYO1D
Ensembl Gene ID:
ENSAPLG00000005131
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041476
946819 - 1012777
65959
ENSAPLT00000023026
890864 - 1048509
157646
ENSAPLT00000005349
892226 - 1014247
122022