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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1004969_1006180_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1004969 - 1006180
Intron Length:
1212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTAATTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCTTGCTAATT
Flanking Amino Acid:
YKIVAAILHLGNLKFSVDGD
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.3
0.59
0.9
70.1
39.8
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
49.3
0.03
2.3
75.59
41.9

Associated Gene:

Gene:
MYO1D
Ensembl Gene ID:
ENSAPLG00000005131
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041476
946819 - 1012777
65959
ENSAPLT00000023026
890864 - 1048509
157646
ENSAPLT00000005349
892226 - 1014247
122022