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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1008471_1009961_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1008471 - 1009961
Intron Length:
1491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCATAT
U12 Branch Point Sequence:
ATATCCAGAAAT
Flanking Amino Acid:
GHINNYLLEKSRVIVQQPGE
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
74.1
38.3
Major BPS
61.6
0.29
1.1
57.2
40.1
Major PPT
87.4
0.84
0.6
82
22.8
Minor 5ss
37.2
-1.4
3
47
48.3
Minor BPS
53.7
0.2
1.8
75.43
40

Associated Gene:

Gene:
MYO1D
Ensembl Gene ID:
ENSAPLG00000005131
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041476
946819 - 1012777
65959
ENSAPLT00000023026
890864 - 1048509
157646
ENSAPLT00000005349
892226 - 1014247
122022