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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1012010_1014203_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1012010 - 1014203
Intron Length:
2194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGGCTT
5'SS Class:
major
3'SS Sequence:
TCATCCTGGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TTTGTCTCATCC
Flanking Amino Acid:
LAMNPLAVHLWFEKGRIYTF
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
67.8
42.7
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
60.3
0.23
1
58
38.2
Minor 5ss
42.9
-0.8
3.4
61.4
44.5
Minor BPS
52.6
0.06
1.9
69.92
41.8

Associated Gene:

Gene:
MYO1D
Ensembl Gene ID:
ENSAPLG00000005131
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005349
892226 - 1014247
122022