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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1084525_1086396_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1084525 - 1086396
Intron Length:
1872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTCCAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ACTTCATGCATT
Flanking Amino Acid:
RSFIAHTKRYSRSDSLDQIP
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
67.3
0.39
1
63.3
38.4
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
46.8
-0.1
2.1
68.33
42.7

Associated Gene:

Gene:
MAP3K14
Ensembl Gene ID:
ENSAPLG00000004431
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004574
1076890 - 1099882
22993