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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1088490_1090899_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1088490 - 1090899
Intron Length:
2410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCACTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
GTGTCATAAAAT
Flanking Amino Acid:
QTGFQCAAKKVQVEHFRAEE
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
76.8
34.6
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
80.2
0.68
0.9
71.2
39.6
Minor 5ss
45.6
-0.5
2.9
64.6
46.7
Minor BPS
49.7
0.06
2
71.41
44.8

Associated Gene:

Gene:
MAP3K14
Ensembl Gene ID:
ENSAPLG00000004431
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004574
1076890 - 1099882
22993