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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1093269_1093656_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1093269 - 1093656
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
GCCTCTTTCACT
Flanking Amino Acid:
QYYNHPLCLKIAKEPPPLRE
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
77.7
0.69
1
81
30.2
Major PPT
81.6
0.71
0.9
75.8
38.1
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
59.7
0.39
1.8
71.8
45.5

Associated Gene:

Gene:
MAP3K14
Ensembl Gene ID:
ENSAPLG00000004431
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004574
1076890 - 1099882
22993