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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1093808_1094484_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1093808 - 1094484
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAATG
5'SS Class:
major
3'SS Sequence:
TCTGTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGTAT
U12 Branch Point Sequence:
TTTCTCTGTATG
Flanking Amino Acid:
KTKTSVALEEVGGVTSPWKG
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
68.8
42.1
Major BPS
58.9
0.22
1.5
59.6
46.8
Major PPT
84.5
0.78
0.7
80.6
31.5
Minor 5ss
35
-1.7
3.4
48
47.7
Minor BPS
48.9
-0.2
1.8
61.19
40.6

Associated Gene:

Gene:
MAP3K14
Ensembl Gene ID:
ENSAPLG00000004431
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004574
1076890 - 1099882
22993