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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1094839_1095960_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1094839 - 1095960
Intron Length:
1122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCACTTTAAATG
Flanking Amino Acid:
SEQELQQLEIELFLNSLSQP
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
86.4
0.82
0.8
80.9
31.1
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
47.1
-0.3
1.6
48.31
40.1

Associated Gene:

Gene:
MAP3K14
Ensembl Gene ID:
ENSAPLG00000004431
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004574
1076890 - 1099882
22993