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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1096068_1097433_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1096068 - 1097433
Intron Length:
1366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATATA
5'SS Class:
strong_major
3'SS Sequence:
CTTACTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTGTGCTTACTT
Flanking Amino Acid:
SPFVSDASEKNSMKASHSLR
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
85.6
24.7
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
82.7
0.73
0.8
77
31.5
Minor 5ss
33.2
-1.9
2.9
41.8
44.8
Minor BPS
58.6
0.35
2.1
79.19
43.7

Associated Gene:

Gene:
MAP3K14
Ensembl Gene ID:
ENSAPLG00000004431
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004574
1076890 - 1099882
22993