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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1098268_1099698_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1098268 - 1099698
Intron Length:
1431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
TTCAGATTAATT
Flanking Amino Acid:
GDIATGISSQVRVPAFSLVT
Intron Amino Acid Position:
891

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
81.2
0.7
0.8
75.6
33
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
51.2
0.12
2.1
73.63
43.4

Associated Gene:

Gene:
MAP3K14
Ensembl Gene ID:
ENSAPLG00000004431
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004574
1076890 - 1099882
22993