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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1107627_1107932_R

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1107627 - 1107932
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGGC
5'SS Class:
major
3'SS Sequence:
CACCTCTCCCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCTCAG
U12 Branch Point Sequence:
CTTCCCTGCACC
Flanking Amino Acid:
MFMRFIRAYKKAEQDIELWK
Intron Amino Acid Position:
1062

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
67.5
37.8
Major BPS
48.8
-0
1.5
57.1
41.8
Major PPT
58.7
0.2
1
55.8
33.6
Minor 5ss
28.2
-2.5
3.7
40.6
46
Minor BPS
53.9
0.11
2
68.78
42.5

Associated Gene:

Gene:
FMNL1
Ensembl Gene ID:
ENSAPLG00000003619
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045003
1106052 - 1111901
5850
ENSAPLT00000029626
1106582 - 1111777
5196
ENSAPLT00000003709
1106052 - 1116851
10800