About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1111902_1112011_R


Intron Information:

Intron Rank:
11

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
1111902 - 1112011

Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTGGGACGT

5'SS Class:
major

3'SS Sequence:
CTCGTCCCCACAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGAGCAC

U12 Branch Point Sequence:
TCGTCCCCACAG

Flanking Amino Acid:
MEELQEHVSQLTEKLQDAEN

Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.4
0.6
1
62.5
43.9

Major BPS
45.3
-0.2
1.4
51.4
43.9

Major PPT
71.6
0.49
0.8
64.6
31

Minor 5ss
26.8
-2.7
3.3
38.8
46.3

Minor BPS
40.4
-0.8
2.1
45.45
46.4

Associated Gene:

Gene:
FMNL1

Ensembl Gene ID:

Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

1106052 - 1116851
10800