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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1116216_1116298_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1116216 - 1116298
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCAAC
U12 Branch Point Sequence:
CCGGTGCCAACG
Flanking Amino Acid:
YLDTGGVSRKFKRRVQESTQ
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
48.7
-0
1.3
56.4
38.8
Major PPT
72
0.5
0.8
65.4
30.4
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
32.8
-1.4
2.2
30.71
41.7

Associated Gene:

Gene:
FMNL1
Ensembl Gene ID:
ENSAPLG00000003619
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003709
1106052 - 1116851
10800