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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1137110_1139093_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1137110 - 1139093
Intron Length:
1984

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCTGGTGGT
5'SS Class:
major
3'SS Sequence:
GCCTGCTCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAG
U12 Branch Point Sequence:
GGTCCCCCAGCG
Flanking Amino Acid:
IVAGGELFER
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.4
68.2
39.7
Major BPS
39.5
-0.6
1.5
43.7
39.4
Major PPT
69
0.43
0.9
65
36.4
Minor 5ss
21.5
-3.3
4
36.6
40.9
Minor BPS
42
-0.7
2
48.41
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030282
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027313
1134400 - 1139095
4696