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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_117463_156296_F

Intron Information:

Intron Rank:
135312
Intron Class:
major
Intron Phase:
Intron Coordinates:
117463 - 156296
Intron Length:
38834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAG
U12 Branch Point Sequence:
TCTTTCCCCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
50.9
0.02
1.4
49.4
37.6
Major PPT
78
0.63
0.7
73.3
25.1
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
43.8
-0.4
2.1
59.37
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022786
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037561
116875 - 156785
39911