Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1175270_1175773_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1175270 - 1175773

Intron Length:

504

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTTAAATGC

5'SS Class:

weak_major

3'SS Sequence:

ACTGCCACCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAA

U12 Branch Point Sequence:

ACTGCCACCACA

Flanking Amino Acid:

SLSPATLFVHPWY*

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

51.5

0.04

1.4

52.3

Major BPS

50.5

0.01

1.3

60.6

37.4

Major PPT

63.3

0.3

0.9

54.8

34.5

Minor 5ss

35.4

-1.7

42.4

37.9

Minor BPS

42.3

-0.6

2.2

54.72

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020177

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040047

1174204 - 1175785

1582