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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1179873_1180378_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1179873 - 1180378
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCGTG
5'SS Class:
major
3'SS Sequence:
CTTGCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
ATGGCCTTGTCT
Flanking Amino Acid:
MSDALILAKSKGFDVFNALD
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
63.5
42.9
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
77.1
0.61
0.8
70
30.9
Minor 5ss
35
-1.7
3.5
47.2
48.2
Minor BPS
44.7
-0.3
3.5
72.94
44.4

Associated Gene:

Gene:
NMT1
Ensembl Gene ID:
ENSAPLG00000009872
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010320
1177899 - 1195368
17470