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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1182604_1183053_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1182604 - 1183053
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TTTCTTTCCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTGGGTTTCATG
Flanking Amino Acid:
AIPATIHIYDTEKKMVEINF
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.3
78.8
35.5
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
75.6
0.58
1
75.5
33.3
Minor 5ss
36.7
-1.5
3.3
49.9
39.7
Minor BPS
42.9
-0.7
2.2
49.76
45.5

Associated Gene:

Gene:
NMT1
Ensembl Gene ID:
ENSAPLG00000009872
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010320
1177899 - 1195368
17470