Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1183920_1184601_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1183920 - 1184601

Intron Length:

682

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TCTCCTGCTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAA

U12 Branch Point Sequence:

ACTCGCTTGACC

Flanking Amino Acid:

DALDLGDRGVLKELYTLLNE

Intron Amino Acid Position:

169

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

75.8

35.2

Major BPS

70.6

0.51

1.1

71.6

36.4

Major PPT

75.4

0.57

0.8

73.4

31.6

Minor 5ss

29.8

-2.3

2.6

30.5

37.5

Minor BPS

56.2

0.18

1.8

65.5

40.3

Associated Gene:

Gene:

NMT1

Ensembl Gene ID:

ENSAPLG00000009872

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010320

1177899 - 1195368

17470