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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1199711_1199820_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1199711 - 1199820
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGCCTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTGAC
U12 Branch Point Sequence:
CGCTGAGTGACG
Flanking Amino Acid:
LKQVLKYFVLALAFSAGARR
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
32.7
Major BPS
48.3
-0.1
1.3
40.8
41.4
Major PPT
69.6
0.44
1.1
62.3
44.3
Minor 5ss
38
-1.4
3.4
55
49.2
Minor BPS
36.7
-1.1
2.4
39.81
44.2

Associated Gene:

Gene:
DCAKD
Ensembl Gene ID:
ENSAPLG00000026366
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019313
1196687 - 1200671
3985